IL_8P2K_028

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAC*GGCCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_028 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2898

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8P2K|1|A2|G|535
8P2K|1|A2|G|536
8P2K|1|A2|A|537
8P2K|1|A2|C|538
*
8P2K|1|A2|G|547
8P2K|1|A2|G|548
8P2K|1|A2|C|549
8P2K|1|A2|C|550
8P2K|1|A2|C|551

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AD

40S ribosomal protein S30