IL_8P2K_029

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

8P2K|1|A2|G|589

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_029 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1183

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8P2K|1|A2|G|564
8P2K|1|A2|A|565
8P2K|1|A2|G|566
*
8P2K|1|A2|C|586
8P2K|1|A2|G|587
8P2K|1|A2|A|588
8P2K|1|A2|G|589
8P2K|1|A2|G|590
8P2K|1|A2|A2M|591
8P2K|1|A2|U|592
8P2K|1|A2|C|593

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

40S ribosomal protein S9