IL_8P2K_061

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_061 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.2002

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8P2K|1|A2|G|1109
8P2K|1|A2|C|1110
8P2K|1|A2|G|1111
*
8P2K|1|A2|C|1124
8P2K|1|A2|C|1125

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain AZ

40S ribosomal protein SA

Chain Aa

40S ribosomal protein S3a

Chain Aq

40S ribosomal protein eS17