IL_8P2K_072
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(OMG)UGCAU*AUGCC
- Length
- 12 nucleotides
- Bulged bases
- 8P2K|1|A2|C|1332
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P2K_072 not in the Motif Atlas
- Geometric match to IL_8DP3_002
- Geometric discrepancy: 0.3878
- The information below is about IL_8DP3_002
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
8P2K|1|A2|G|1328
8P2K|1|A2|OMG|1329
8P2K|1|A2|U|1330
8P2K|1|A2|G|1331
8P2K|1|A2|C|1332
8P2K|1|A2|A|1333
8P2K|1|A2|U|1334
*
8P2K|1|A2|A|1499
8P2K|1|A2|U|1500
8P2K|1|A2|G|1501
8P2K|1|A2|C|1502
8P2K|1|A2|C|1503
Current chains
- Chain A2
- 18s rRNA
Nearby chains
- Chain AC
- Ribosomal protein S27a
- Chain AG
- 40S ribosomal protein S29
- Chain Ac
- 40S ribosomal protein S3
- Chain Aj
- S10_plectin domain-containing protein
- Chain At
- 40S ribosomal protein uS10
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