IL_8P2K_080

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8P2K|1|A2|C|1434, 8P2K|1|A2|C|1435, 8P2K|1|A2|C|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_080 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2689

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8P2K|1|A2|U|1409
8P2K|1|A2|A|1410
*
8P2K|1|A2|U|1433
8P2K|1|A2|C|1434
8P2K|1|A2|C|1435
8P2K|1|A2|C|1436
8P2K|1|A2|C|1437
8P2K|1|A2|C|1438
8P2K|1|A2|A|1439

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ap

uS9

Chain At

40S ribosomal protein uS10