IL_8P2K_083

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_083 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.1275

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8P2K|1|A2|A|1538
8P2K|1|A2|C|1539
8P2K|1|A2|U|1540
*
8P2K|1|A2|A|1595
8P2K|1|A2|U|1596
8P2K|1|A2|U|1597

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ae

Ribosomal protein S5

Chain Ap

uS9

Chain Ar

40S ribosomal protein S18

Chain As

40S ribosomal protein S19

Chain Ay

40S ribosomal protein S25