IL_8P2K_087

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8P2K|1|A2|C|1702, 8P2K|1|A2|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_087 not in the Motif Atlas

Homologous match to IL_8C3A_470

Geometric discrepancy: 0.0897

The information below is about IL_8C3A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8P2K|1|A2|C|1701
8P2K|1|A2|C|1702
8P2K|1|A2|G|1703
*
8P2K|1|A2|C|1834
8P2K|1|A2|A|1835
8P2K|1|A2|A|1836
8P2K|1|A2|G|1837

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AE

eS26

Chain AT

Transfer RNA; tRNA

Chain An

40S ribosomal protein S14