IL_8P2K_104

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8P2K|1|B5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_104 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1265

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8P2K|1|B5|A|12
8P2K|1|B5|U|13
8P2K|1|B5|C|14
*
8P2K|1|B8|G|143
8P2K|1|B8|U|144

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15

Chain BX

Ribosomal_L23eN domain-containing protein