IL_8P2K_120

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUU*G(A2M)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_120 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.136

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8P2K|1|B5|C|390
8P2K|1|B5|U|391
8P2K|1|B5|U|392
*
8P2K|1|B5|G|399
8P2K|1|B5|A2M|400
8P2K|1|B5|G|401

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

uL22

Chain BY

Ribosomal protein L26

Chain Na

Nascent polypeptide-associated complex subunit alpha