IL_8P2K_122

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8P2K|1|B5|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_122 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3968

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8P2K|1|B5|G|443
8P2K|1|B5|G|444
8P2K|1|B5|U|445
8P2K|1|B5|C|446
*
8P2K|1|B5|G|1244
8P2K|1|B5|C|1245
8P2K|1|B5|U|1246
8P2K|1|B5|A|1247
8P2K|1|B5|C|1248

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Be

Ribosomal protein L32

Chain Bf

60S ribosomal protein L35a