IL_8P2K_141

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

8P2K|1|B5|C|732, 8P2K|1|B5|C|733, 8P2K|1|B5|C|823, 8P2K|1|B5|C|824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_141 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.3683

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8P2K|1|B5|C|731
8P2K|1|B5|C|732
8P2K|1|B5|C|733
8P2K|1|B5|G|734
*
8P2K|1|B5|C|822
8P2K|1|B5|C|823
8P2K|1|B5|C|824
8P2K|1|B5|G|825

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

60S ribosomal protein L14