IL_8P2K_150

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8P2K|1|B5|U|1090

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_150 not in the Motif Atlas

Geometric match to IL_4V88_439

Geometric discrepancy: 0.3433

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8P2K|1|B5|C|1011
8P2K|1|B5|C|1012
*
8P2K|1|B5|G|1089
8P2K|1|B5|U|1090
8P2K|1|B5|G|1091

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BS

60S ribosomal protein L18a

Chain BT

60S ribosomal protein L21