IL_8P2K_152

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGCG,CGCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_152 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.1876

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

8P2K|1|B5|C|1128
8P2K|1|B5|G|1129
8P2K|1|B5|C|1130
8P2K|1|B5|G|1131
*
8P2K|1|B5|C|1208
8P2K|1|B5|G|1209
8P2K|1|B5|C|1210
8P2K|1|B5|G|1211

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain Bb

60S ribosomal protein L29