IL_8P2K_162

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

8P2K|1|B5|C|1440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_162 not in the Motif Atlas

Homologous match to IL_8GLP_055

Geometric discrepancy: 0.1416

The information below is about IL_8GLP_055

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

8P2K|1|B5|G|1434
8P2K|1|B5|C|1435
*
8P2K|1|B5|G|1439
8P2K|1|B5|C|1440
8P2K|1|B5|C|1441

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

60S ribosomal protein L13

Chain Ba

60S ribosomal protein L27a

Chain Bi

60S ribosomal protein L36