IL_8P2K_170

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUU*A(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_170 not in the Motif Atlas

Homologous match to IL_8C3A_037

Geometric discrepancy: 0.2972

The information below is about IL_8C3A_037

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8P2K|1|B5|U|1626
8P2K|1|B5|U|1627
8P2K|1|B5|U|1628
*
8P2K|1|B5|A|1637
8P2K|1|B5|PSU|1638
8P2K|1|B5|A|1639

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

60S ribosomal protein L13

Chain BQ

eL18

Chain BT

60S ribosomal protein L21

Chain Ba

60S ribosomal protein L27a

Chain Bb

60S ribosomal protein L29