IL_8P2K_177

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUCUU*AACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_177 not in the Motif Atlas

Geometric match to IL_8P9A_467

Geometric discrepancy: 0.3705

The information below is about IL_8P9A_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07469.3

Basepair signature

cWW-tSH-cWW-cSH-R-cWW

Number of instances in this motif group

3

Unit IDs

8P2K|1|B5|G|1691
8P2K|1|B5|G|1692
8P2K|1|B5|U|1693
8P2K|1|B5|C|1694
8P2K|1|B5|U|1695
8P2K|1|B5|U|1696
*
8P2K|1|B5|A|1714
8P2K|1|B5|A|1715
8P2K|1|B5|C|1716
8P2K|1|B5|C|1717

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Ribosomal protein L5 eukaryotic C-terminal domain-containing protein

Chain BI

60S ribosomal protein L10