IL_8P2K_191

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8P2K|1|B5|G|1914

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_191 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3532

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8P2K|1|B5|G|1912
8P2K|1|B5|U|1913
8P2K|1|B5|G|1914
8P2K|1|B5|G|1915
8P2K|1|B5|C|1916
*
8P2K|1|B5|G|1928
8P2K|1|B5|A|1929
8P2K|1|B5|A|1930
8P2K|1|B5|U|1931
8P2K|1|B5|C|1932

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

60S acidic ribosomal protein P0

Chain Bt

60S ribosomal protein L12