IL_8P2K_198

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG(A2M)G*CU(OMC)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_198 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2322

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8P2K|1|B5|G|2242
8P2K|1|B5|G|2243
8P2K|1|B5|A2M|2244
8P2K|1|B5|G|2245
*
8P2K|1|B5|C|2645
8P2K|1|B5|U|2646
8P2K|1|B5|OMC|2647
8P2K|1|B5|C|2648

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain Bg

60S ribosomal protein L34

Chain Bj

Ribosomal protein L37

Chain Bl

60S ribosomal protein L39-like