IL_8P2K_208

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

8P2K|1|B5|U|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_208 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1112

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8P2K|1|B5|C|2489
8P2K|1|B5|A|2490
8P2K|1|B5|G|2491
*
8P2K|1|B5|C|2528
8P2K|1|B5|G|2529
8P2K|1|B5|U|2530
8P2K|1|B5|G|2531

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bg

60S ribosomal protein L34