IL_8P2K_228

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8P2K|1|B5|A|3443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_228 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3494

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8P2K|1|B5|G|3442
8P2K|1|B5|A|3443
8P2K|1|B5|A|3444
8P2K|1|B5|U|3445
8P2K|1|B5|G|3446
*
8P2K|1|B5|C|3471
8P2K|1|B5|G|3472
8P2K|1|B5|C|3473

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Aa

40S ribosomal protein S3a

Chain BA

60S ribosomal protein L8