IL_8P2K_239

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8P2K|1|B5|A|4131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_239 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.094

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8P2K|1|B5|G|3648
8P2K|1|B5|A|3649
*
8P2K|1|B5|U|4130
8P2K|1|B5|A|4131
8P2K|1|B5|C|4132
8P2K|1|B5|C|4133

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain BA

60S ribosomal protein L8

Chain BK

Glucose-6-phosphate isomerase