IL_8P2K_326

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(4AC)G*CA(OMG)

Length

5 nucleotides

Bulged bases

8P2K|1|A2|A|1490

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_326 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.1578

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8P2K|1|A2|4AC|1338
8P2K|1|A2|G|1339
*
8P2K|1|A2|C|1489
8P2K|1|A2|A|1490
8P2K|1|A2|OMG|1491

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AG

40S ribosomal protein S29

Chain Ab

40S ribosomal protein S2

Chain Ac

40S ribosomal protein S3

Chain Ap

uS9

Chain At

40S ribosomal protein uS10