IL_8P2K_374

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_374 not in the Motif Atlas

Homologous match to IL_4WF9_126

Geometric discrepancy: 0.1301

The information below is about IL_4WF9_126

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

8P2K|1|B7|C|28
8P2K|1|B7|C|29
*
8P2K|1|B7|G|48
8P2K|1|B7|A|49
8P2K|1|B7|A|50
8P2K|1|B7|G|51

Current chains

Chain B7

5S rRNA

Nearby chains

Chain BD

Ribosomal protein L5 eukaryotic C-terminal domain-containing protein

Chain BJ

60S ribosomal protein L11