IL_8P85_024

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_024 not in the Motif Atlas

Geometric match to IL_8P9A_254

Geometric discrepancy: 0.1036

The information below is about IL_8P9A_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8P85|1|1|C|758
8P85|1|1|U|759
8P85|1|1|G|760
8P85|1|1|A|761
8P85|1|1|U|762
8P85|1|1|G|763
*
8P85|1|1|C|768
8P85|1|1|G|769
8P85|1|1|G|770
8P85|1|1|A|771
8P85|1|1|U|772
8P85|1|1|G|773

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AP

60S ribosomal protein L42-A

Chain t

60S ribosomal protein L13-A