IL_8P85_055

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

8P85|1|1|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_055 not in the Motif Atlas

Geometric match to IL_8P9A_286

Geometric discrepancy: 0.0794

The information below is about IL_8P9A_286

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8P85|1|1|C|1385
8P85|1|1|A|1386
8P85|1|1|G|1387
*
8P85|1|1|C|1420
8P85|1|1|G|1421

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AF

60S ribosomal protein L32

Chain l

60S ribosomal protein L4-A

Chain n

60S ribosomal protein L6-A