IL_8P85_152

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8P85|1|A|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_152 not in the Motif Atlas

Geometric match to IL_8P9A_383

Geometric discrepancy: 0.1167

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

8P85|1|A|G|143
8P85|1|A|U|144
8P85|1|A|A|145
8P85|1|A|U|146
8P85|1|A|A|147
8P85|1|A|A|148
8P85|1|A|C|149
*
8P85|1|A|G|165
8P85|1|A|C|166
8P85|1|A|U|167
8P85|1|A|A|168
8P85|1|A|A|169
8P85|1|A|U|170
8P85|1|A|A|171
8P85|1|A|C|172

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6-A

Chain Z

40S ribosomal protein S24-A