IL_8P85_155

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

8P85|1|A|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_155 not in the Motif Atlas

Geometric match to IL_8P9A_386

Geometric discrepancy: 0.1163

The information below is about IL_8P9A_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8P85|1|A|G|204
8P85|1|A|U|205
8P85|1|A|A|206
*
8P85|1|A|U|259
8P85|1|A|U|260
8P85|1|A|U|261
8P85|1|A|U|262
8P85|1|A|C|263

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S8-A