IL_8P85_162

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8P85|1|A|U|320, 8P85|1|A|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_162 not in the Motif Atlas

Geometric match to IL_8P9A_392

Geometric discrepancy: 0.1586

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8P85|1|A|U|318
8P85|1|A|U|319
8P85|1|A|U|320
8P85|1|A|C|321
8P85|1|A|G|322
8P85|1|A|A|323
*
8P85|1|A|U|345
8P85|1|A|G|346

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain J

40S ribosomal protein S8-A

Chain M

40S ribosomal protein S11-A