IL_8P85_184

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_184 not in the Motif Atlas

Geometric match to IL_8CRE_433

Geometric discrepancy: 0.0863

The information below is about IL_8CRE_433

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8P85|1|A|G|871
8P85|1|A|G|872
8P85|1|A|U|873
8P85|1|A|C|874
*
8P85|1|A|G|953
8P85|1|A|G|954
8P85|1|A|A|955
8P85|1|A|C|956

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S1-A

Chain O

40S ribosomal protein S13

Chain c

40S ribosomal protein S27-A