IL_8P85_382

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_382 not in the Motif Atlas

Geometric match to IL_8P9A_382

Geometric discrepancy: 0.0354

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8P85|1|sR|U|117
8P85|1|sR|U|118
8P85|1|sR|A|119
8P85|1|sR|U|120
8P85|1|sR|U|121
8P85|1|sR|U|122
*
8P85|1|sR|A|295
8P85|1|sR|U|296
8P85|1|sR|U|297
8P85|1|sR|C|298
8P85|1|sR|A|299

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8-A