IL_8P85_393

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8P85|1|sR|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_393 not in the Motif Atlas

Geometric match to IL_8P9A_393

Geometric discrepancy: 0.0295

The information below is about IL_8P9A_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8P85|1|sR|G|363
8P85|1|sR|G|364
8P85|1|sR|G|365
*
8P85|1|sR|C|376
8P85|1|sR|G|377
8P85|1|sR|A|378
8P85|1|sR|U|379
8P85|1|sR|U|380
8P85|1|sR|C|381

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A