IL_8P85_400

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUA*UAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_400 not in the Motif Atlas

Geometric match to IL_8P9A_400

Geometric discrepancy: 0.0411

The information below is about IL_8P9A_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8P85|1|sR|G|516
8P85|1|sR|U|517
8P85|1|sR|A|518
*
8P85|1|sR|U|533
8P85|1|sR|A|534
8P85|1|sR|A|535
8P85|1|sR|C|536

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s9

40S ribosomal protein S9-A