IL_8P85_408

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_408 not in the Motif Atlas

Geometric match to IL_8P9A_408

Geometric discrepancy: 0.0246

The information below is about IL_8P9A_408

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8P85|1|sR|C|646
8P85|1|sR|G|647
8P85|1|sR|G|648
*
8P85|1|sR|C|686
8P85|1|sR|G|687
8P85|1|sR|G|688

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d2

40S ribosomal protein S22-A