IL_8P85_427

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8P85|1|sR|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_427 not in the Motif Atlas

Geometric match to IL_8P9A_427

Geometric discrepancy: 0.0551

The information below is about IL_8P9A_427

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

8P85|1|sR|G|1051
8P85|1|sR|U|1052
8P85|1|sR|G|1053
*
8P85|1|sR|C|1066
8P85|1|sR|C|1067

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d7

40S ribosomal protein S27-A

Chain s0

40S ribosomal protein S0-A

Chain s1

40S ribosomal protein S1-A