IL_8P85_438

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8P85|1|sR|U|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_438 not in the Motif Atlas

Geometric match to IL_8P9A_437

Geometric discrepancy: 0.0535

The information below is about IL_8P9A_437

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

8P85|1|sR|G|1268
8P85|1|sR|U|1269
8P85|1|sR|G|1270
*
8P85|1|sR|C|1440
8P85|1|sR|C|1441

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c0

Small ribosomal subunit protein eS10A,Small ribosomal subunit protein eS10A,40S ribosomal protein S10-A

Chain d9

Small ribosomal subunit protein uS14A