IL_8P85_452

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P85_452 not in the Motif Atlas

Geometric match to IL_8P9A_451

Geometric discrepancy: 0.0327

The information below is about IL_8P9A_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8P85|1|sR|G|1540
8P85|1|sR|G|1541
8P85|1|sR|G|1542
8P85|1|sR|A|1543
8P85|1|sR|U|1544
8P85|1|sR|A|1545
*
8P85|1|sR|U|1566
8P85|1|sR|U|1567
8P85|1|sR|C|1568
8P85|1|sR|A|1569
8P85|1|sR|A|1570
8P85|1|sR|C|1571

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c8

40S ribosomal protein S18-A

Chain c9

40S ribosomal protein S19-A