IL_8P8M_012

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8P8M|1|A|U|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_012 not in the Motif Atlas

Homologous match to IL_8C3A_013

Geometric discrepancy: 0.1485

The information below is about IL_8C3A_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8P8M|1|A|G|189
8P8M|1|A|U|190
8P8M|1|A|U|191
*
8P8M|1|A|A|204
8P8M|1|A|C|205

Current chains

Chain A

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L4-A

Chain QY

60S ribosomal protein L26-A