IL_8P8M_021

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_021 not in the Motif Atlas

Homologous match to IL_5TBW_021

Geometric discrepancy: 0.0911

The information below is about IL_5TBW_021

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8P8M|1|A|G|668
8P8M|1|A|U|669
8P8M|1|A|C|670
*
8P8M|1|A|G|792
8P8M|1|A|C|793
8P8M|1|A|U|794

Current chains

Chain A

25S rRNA

Nearby chains

Chain JT

60S ribosomal protein L13-A

Chain LH

60S ribosomal protein L4-A

Chain QP

60S ribosomal protein L18-A

Chain RA

60S ribosomal protein L28