IL_8P8M_029

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

8P8M|1|A|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_029 not in the Motif Atlas

Geometric match to IL_7A0S_017

Geometric discrepancy: 0.1353

The information below is about IL_7A0S_017

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8P8M|1|A|G|833
8P8M|1|A|U|834
*
8P8M|1|A|G|859
8P8M|1|A|G|860
8P8M|1|A|C|861

Current chains

Chain A

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L2-A

Chain QQ

60S ribosomal protein L19-A

Chain RT

60S ribosomal protein L43-A