IL_8P8M_035
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CA*UAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8M_035 not in the Motif Atlas
- Homologous match to IL_8C3A_038
- Geometric discrepancy: 0.1083
- The information below is about IL_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05035.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 38
Unit IDs
8P8M|1|A|C|969
8P8M|1|A|A|970
*
8P8M|1|A|U|1111
8P8M|1|A|A|1112
8P8M|1|A|G|1113
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JT
- 60S ribosomal protein L13-A
- Chain QP
- 60S ribosomal protein L18-A
- Chain QT
- 60S ribosomal protein L21-A
- Chain RA
- 60S ribosomal protein L28
- Chain RB
- 60S ribosomal protein L29
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