IL_8P8M_037

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8P8M|1|A|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_037 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.0934

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8P8M|1|A|A|983
8P8M|1|A|G|984
8P8M|1|A|U|985
*
8P8M|1|A|A|1099
8P8M|1|A|U|1100

Current chains

Chain A

25S rRNA

Nearby chains

Chain LK

60S ribosomal protein L7-A

Chain QT

60S ribosomal protein L21-A

Chain RB

60S ribosomal protein L29