IL_8P8M_050
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 8P8M|1|A|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8M_050 not in the Motif Atlas
- Geometric match to IL_5TBW_050
- Geometric discrepancy: 0.1605
- The information below is about IL_5TBW_050
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8P8M|1|A|A|1180
8P8M|1|A|U|1181
8P8M|1|A|A|1182
*
8P8M|1|A|U|1324
8P8M|1|A|U|1325
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JU
- 60S ribosomal protein L14-A
- Chain JW
- 60S ribosomal protein L16-A
- Chain LK
- 60S ribosomal protein L7-A
- Chain QS
- 60S ribosomal protein L20-A
- Chain RF
- 60S ribosomal protein L33-A
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