IL_8P8M_138

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

8P8M|1|LE|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_138 not in the Motif Atlas

Homologous match to IL_8C3A_143

Geometric discrepancy: 0.0991

The information below is about IL_8C3A_143

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8P8M|1|LE|C|15
8P8M|1|LE|U|16
*
8P8M|1|LE|A|63
8P8M|1|LE|A|64
8P8M|1|LE|G|65

Current chains

Chain LE

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain LI

60S ribosomal protein L5

Chain LN

60S ribosomal protein L10

Chain LO

60S ribosomal protein L11-A