IL_8P8M_147
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCCUGAUUUUAUGCAGGCCACCAU
- Length
- 40 nucleotides
- Bulged bases
- 8P8M|1|A|C|1556, 8P8M|1|A|A|1558, 8P8M|1|A|U|1568, 8P8M|1|A|U|1569, 8P8M|1|A|U|1570, 8P8M|1|A|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P8M|1|A|A|1537
8P8M|1|A|G|1538
8P8M|1|A|A|1539
8P8M|1|A|U|1540
8P8M|1|A|G|1541
8P8M|1|A|G|1542
*
8P8M|1|A|C|1551
8P8M|1|A|G|1552
8P8M|1|A|U|1553
8P8M|1|A|U|1554
8P8M|1|A|U|1555
8P8M|1|A|C|1556
8P8M|1|A|A|1557
8P8M|1|A|A|1558
8P8M|1|A|A|1559
8P8M|1|A|G|1560
8P8M|1|A|G|1561
8P8M|1|A|C|1562
8P8M|1|A|C|1563
8P8M|1|A|U|1564
8P8M|1|A|G|1565
8P8M|1|A|A|1566
8P8M|1|A|U|1567
8P8M|1|A|U|1568
8P8M|1|A|U|1569
8P8M|1|A|U|1570
8P8M|1|A|A|1571
8P8M|1|A|U|1572
8P8M|1|A|G|1573
8P8M|1|A|C|1574
8P8M|1|A|A|1575
8P8M|1|A|G|1576
8P8M|1|A|G|1577
8P8M|1|A|C|1578
8P8M|1|A|C|1579
8P8M|1|A|A|1580
8P8M|1|A|C|1581
8P8M|1|A|C|1582
8P8M|1|A|A|1583
8P8M|1|A|U|1584
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JV
- 60S ribosomal protein L15-A
- Chain LD
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L2-A
- Chain LL
- 60S ribosomal protein L8-A
- Chain QX
- 60S ribosomal protein L25
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: