IL_8P8N_010

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

8P8N|1|A|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_010 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.266

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

8P8N|1|A|U|169
8P8N|1|A|G|170
*
8P8N|1|A|U|248
8P8N|1|A|U|249
8P8N|1|A|U|250
8P8N|1|A|G|251
8P8N|1|A|U|252
8P8N|1|A|A|253

Current chains

Chain A

25S rRNA

Nearby chains

Chain JT

60S ribosomal protein L13-A

Chain RH

60S ribosomal protein L35-A