IL_8P8N_013

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

8P8N|1|A|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_013 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.0714

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8P8N|1|A|G|337
8P8N|1|A|A|338
8P8N|1|A|C|339
*
8P8N|1|LD|G|25
8P8N|1|LD|U|26

Current chains

Chain A

25S rRNA

Chain LD

5.8S rRNA

Nearby chains

Chain LH

60S ribosomal protein L4-A

Chain QY

60S ribosomal protein L26-A