IL_8P8N_016

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_016 not in the Motif Atlas

Homologous match to IL_5TBW_016

Geometric discrepancy: 0.0771

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8P8N|1|A|U|429
8P8N|1|A|U|430
8P8N|1|A|U|431
*
8P8N|1|A|A|628
8P8N|1|A|U|629
8P8N|1|A|A|630

Current chains

Chain A

25S rRNA

Nearby chains

Chain JW

60S ribosomal protein L16-A

Chain LD

5.8S ribosomal RNA; 5.8S rRNA

Chain RE

60S ribosomal protein L32

Chain RF

60S ribosomal protein L33-A