IL_8P8N_026

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_026 not in the Motif Atlas

Homologous match to IL_5TBW_026

Geometric discrepancy: 0.1011

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8P8N|1|A|C|758
8P8N|1|A|U|759
8P8N|1|A|G|760
8P8N|1|A|A|761
8P8N|1|A|U|762
8P8N|1|A|G|763
*
8P8N|1|A|C|768
8P8N|1|A|G|769
8P8N|1|A|G|770
8P8N|1|A|A|771
8P8N|1|A|U|772
8P8N|1|A|G|773

Current chains

Chain A

25S rRNA

Nearby chains

Chain JT

60S ribosomal protein L13-A

Chain RA

60S ribosomal protein L28

Chain RQ

60S ribosomal protein L42-A