IL_8P8N_036

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

8P8N|1|A|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_036 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.414

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

8P8N|1|A|C|977
8P8N|1|A|G|978
8P8N|1|A|U|979
8P8N|1|A|A|980
8P8N|1|A|U|981
8P8N|1|A|C|982
*
8P8N|1|A|G|1101
8P8N|1|A|A|1102
8P8N|1|A|A|1103
8P8N|1|A|G|1104

Current chains

Chain A

25S rRNA

Nearby chains

Chain LK

60S ribosomal protein L7-A

Chain QP

60S ribosomal protein L18-A

Chain RB

60S ribosomal protein L29