IL_8P8N_055

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

8P8N|1|A|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_055 not in the Motif Atlas

Homologous match to IL_5TBW_058

Geometric discrepancy: 0.1252

The information below is about IL_5TBW_058

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8P8N|1|A|C|1385
8P8N|1|A|A|1386
8P8N|1|A|G|1387
*
8P8N|1|A|C|1420
8P8N|1|A|G|1421

Current chains

Chain A

25S rRNA

Nearby chains

Chain LD

5.8S ribosomal RNA; 5.8S rRNA

Chain LH

60S ribosomal protein L4-A

Chain LJ

60S ribosomal protein L6-A

Chain RE

60S ribosomal protein L32